Genome Browser, Blat, and liftOver source - from UCSC Genomic Bioinformatics

UCSC Genomic Bioinformatics
http://hgdownload.cse.ucsc.edu/downloads.html

Source Downloads

The Genome Browser, Blat, and liftOver source are freely downloadable for academic, noncommercial, and personal use. For information on commercial licensing, see the Genome Browser and Blat licensing requirements. UCSC Genome Browser source download. Follow the build instructions on our website to build and install the source. The source tree can also be obtained via Git. hgcentral database download. Tables for mirroring the Genome Browser. LiftOver tool (downloadable Linux and MacOSX binary executables). The over.chain liftOver conversion files are located in the individual assembly download sections. A web-based version of LiftOver is available for use here. Other executable binary utilities. Blat source download. Look for the blatSrc* zip file with the most recent date. Blat executables download. Choose the blat directory located under your machine type. Blat documentation