Grape RNA-Seq analysis pipeline environment

http://big.crg.cat/services/grape

a set of workflows that allow for easy exploration of RNA-Seq data. Among other features, it enables the users to perform

• quality checks
• read mapping
• generation of expression and splicing statistics

http://bioinformatics.oxfordjournals.org/content/early/2013/01/16/bioinformatics.btt016.abstract