1. Here Luis, gave a very nice introduction on mixed modeling with R
http://www.quantumforest.com/2011/10/linear-mixed-models-in-r/#idc-container
2. please go the the comments of this blog post, there are many informative comments, especially Lars pointed out his hglm package. It is very attractive.
http://users.du.se/~lrn/DUweb/
http://www.quantumforest.com/2011/10/linear-mixed-models-in-r/#idc-container
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