2012年4月18日星期三

FastQC - a simple way to do some quality control checks on NGS data

http://www.bioinformatics.babraham.ac.uk/projects/fastqc/


FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelinesIt provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis.
The main functions of FastQC are
  • Import of data from BAM, SAM or FastQ files (any variant)
  • Providing a quick overview to tell you in which areas there may be problems
  • Summary graphs and tables to quickly assess your data
  • Export of results to an HTML based permanent report
  • Offline operation to allow automated generation of reports without running the interactive application

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