Screening synteny blocks in pairwise genome comparisons

1. As I remembered, this is the second time I mentioned this tools on Screening synteny blocks in pairwise genome comparisonsthrough integer programming, this tools were generated by Tang. In his github page, you can find more about this tools.


This, MCScanX, should be the new version. Here the paper of this new version. Here an application.

2. ScanMap, (Synteny Mapping and Analysis Program) is a software package for detecting and displayingsyntenic relationships between sequenced chromosomes (pseudomolecules) and/or FPC physical maps. Here the reference.

• The SyMAP package, which can be downloaded below, includes demo files for FPC-to-sequence andsequence-to-sequence synteny computation.
• The User Guide provides instructions on the running the demo, creating a new project, and how to use the interactive display.
• SyMAP can run as a standalone desktop application or from the web.