microRNA target prediction and gene network construction

1. Here, collection of some tools used for microRNA target prediction

List of microRNA Target Prediction Tools. TargetScanHuman; data and code (Perl scripts) to download Another list of microRNA target prediction tools TargetSpy; data and code to download 2. miRNA-gene network construction 2.1 Cytoscape 2.2 Building a network is a fairly straightforward matter. You will need to define what is a node in your network and then define the condition by which to consider two nodes to be connected (form an edge). Then, all you need is to create a file in a simple file text format like GML or an XML based format GraphML. You may generate these with various tools that usually will also allow you to compute certain network properties. Finally you can visualize your network with network drawing tools