evolving all we are: bioinformatics and systems biology in Gent U

2012年3月28日星期三

bioinformatics and systems biology in Gent U

This division incorporates several excellent researchers.

1. bioinformatics and evolutionary genomics
2. microbial systems biology
3. evolutionary systems biology
4. comparative and integrative genomics

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Discover Blogs

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The Molecular Ecologist

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2 周前
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2 周前
iPhylo

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3 周前
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3 周前
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2 个月前
Modern Toolmaking

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2 个月前
ENMTools

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3 个月前
Darren Wilkinson's research blog

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4 个月前
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Pattern recognition in Google Maps - Headline: Second farm in the Hawkesbury region confirmed to have bird flu as biosecurity zone widened. Quite rightly, the news organisation chooses not to ...
4 个月前
The EEB & flow

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6 个月前
Statistics, R, Graphics and Fun

Bye, RStudio/Posit! - Who is down? Me. After more than 10 years at RStudio/Posit, the time has come for me to explore other opportunities. A little over two weeks ago, I was t...
10 个月前
Python for Bioinformatics

Ratio boxes - I worked up a short new chapter for my Geometry book. It's about a device I'm calling ratio boxes, for want of a better word. When we have similar triangle...
11 个月前
Public Rambling

State of the lab 10 and 11 - the first years at ETH Zurich - [image: a lake by a mountain] *Yet another lake by a mountain in Switzerland*This blog post is part of a (nearly) yearly series on running a research grou...
1 年前
theoretical ecology

Time to leave “species richness” behind, as it serves no scientific purpose on x- or y-axis - A guest post by Carsten F. Dormann, University of Freiburg In “biodiversity science”, species richness takes a very prominent role. It is the most analysed...
1 年前
Gregor Gorjanc

Overload of the term "additive" in quantitative genetics - The following discussion came up on SLiM (https://messerlab.org/slim/) mailing list (https://groups.google.com/g/slim-discuss), which I think is highly ind...
1 年前
The OpenHelix Blog

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1 年前
Junk Charts

Losing the plot while stacking up the bars - Kaiser looks at an infographic about dirty American cities.
1 年前
microBEnet: The microbiology of the Built Environment network.

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1 年前
JAGS News

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1 年前
crazyhottommy's blog

10 tips for learning git - 1/ Several basic commands will serve you a long way: git clone git add git commit -m git push Those are enough to get you started. To be honest, those a...
1 年前
Fabio Marroni’s Blog

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1 年前
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1 年前
the mind wobbles

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2 年前
One Tip Per Day

some Vi shortcuts - Copy and paste one line With the cursor at your desired line press yy. Press p wherever you like and the line will be pasted below the line you are on. ...
2 年前
The Genome Factory

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2 年前
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2 年前
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2 年前
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2 年前
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3 年前
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3 年前
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3 年前
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3 年前
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3 年前
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MYRMECOS

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3 年前
Linux Commando

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4 年前
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5 年前
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5 年前
Next-Gen Sequencing

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6 年前
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6 年前
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6 年前
Sharp Statistics

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6 年前
Mailund on the Internet

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6 年前
The MolBio Hut

A “bottoms-up” approach to scientific publishing - A few days ago, a piece was posted at ASAPbio which reminded me of an idea I had a long time ago about a new model for publishing and peer review. I descri...
6 年前
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#113 — Consciousness and the Self - In this episode of the Waking Up podcast, Sam Harris speaks with Anil Seth about the scientific study of consciousness, where consciousness emerges in natu...
6 年前
i'm a chordata! urochordata!

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6 年前
Tr8dr

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7 年前
The Spittoon

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7 年前
Research tips

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7 年前
Timely Portfolio

Picking the Top - In Shorting With Reckless Abandon I expressed my views. I have now started documenting my journey at Picking The Top for anyone who wants to see my foolish...
7 年前
CoreGenomics

CoreGenomics has moved - *Follow this link to Enseqlopedia/coregenomics...* "CoreGenomics is dead...long live CoreGenomics"...the CoreGenomics blog has moved to its new home: http...
7 年前
YOKOFAKUN

Creating a custom GATK Walker (GATK 3.6) : my notebook - This is my notebook for creating a custom engine in GATK. Description I want to read a VCF file and to get a table of category/count. Something like this: ...
7 年前
Portfolio Probe

US market portrait 2016 final - US large cap market returns. Fine print The data are from Yahoo The S&P 500 stocks are used (as implied by Wikipedia on 2016 January 16) that still survive...
7 年前
Ewan's Blog; bioinformatician at large

My blog has moved! - As you may already be aware, I have moved my blog over to WordPress for practical reasons. I've enjoyed Blogger for its simplicity, but the experience on ...
7 年前
Quantitative Ecology

Recursively search for text in R scripts. - Often I find myself needing to search for .R or or .Rmd files in which I have used a specific function. There are a variety of searches that you can do; ho...
7 年前
The Praise of Insects

Cook Islands Insect Expedition: Black Twig Borer - The black twig borer *Xylosandrus compactus* (Eichhoff, 1875). Image courtesy of Ken Walker via PaDIL. Licence: CC: BY. A timely interview on Radio New Z...
7 年前
librestats

Comparing Symmetric Eigenvalue Performance - Lazy reader’s guide: skip to the pretty pictures, skim the conclusions section, ignore the rest. Background I think a lot about eigenvalue and singular ...
8 年前
EvoPhylo

Software and real carpentry - I like Software Carpentry, a non-profit organization teaching basic computing skills to researchers. But if I had one little criticism it would be that the...
8 年前
Graph of the Week

And Yet It Moves: Gravitational Waves - "The moment he was set at liberty, he looked up to the sky and down to the ground, and, stamping with his foot, in a contemplative mood, said, *Eppur si mu...
8 年前
数据科学与R语言

艺术风格的神经网络算法实验 - 2015年九月的时候出现了一篇很趣的论文《A Neural Algorithm of Artistic Style》。论文中提出了一种算法，可以将一张普通的图片，转换成具有某种艺术家的风格。用语言来描述计算流程如下： 1、首先用一个给定参数的卷积神经网络（VGG网络），将原始的内容图片和风格图片进行函数映射...
8 年前
Blog | Wainwright Lab | University of California, Davis

Hello world! - Welcome to Faculty Network Sites. This is your first post. Edit or delete it, then start blogging!
8 年前
bioCS

My knitr LaTeX template: manuscript and supplement interleaved in one source file - Most of the time between starting manuscript and having it accepted after peer-review is spent writing, re-writing and re-arranging content. In Word, keepi...
8 年前
Treevolution: Biology through the evolutionary lens

Response to Late Mitochondrial Origin is Pure Artefact - We recently published a study showing that protobacterial derived proteins in the Last Eukaryotic Common Ancestor (LECA) show a tendency to have shorter...
8 年前
Genome Toolbox

R Function to Calculate Confidence Interval from Odds Ratio and P-value - Every once in a while I need a confidence interval from a published estimate that only reports the estimated odds ratio and respective p-value. With a litt...
8 年前
Haldane's Sieve

Positive selection on a regulatory insertion-deletion polymorphism in FADS2 influences apparent endogenous synthesis of arachidonic acid - Positive selection on a regulatory insertion-deletion polymorphism in FADS2 influences apparent endogenous synthesis of arachidonic acid Kumar S.D. Kothapa...
8 年前
me nugget

RSpectra::svds function now default method for sinkr::dineof - The summary blog post describing the RSpectra (formerly rARPACK) package made a convincing case for the improved decomposition speed of the "svds" function...
8 年前
Bigcomputing

Setting up the Twitter R package for text analytics - The Twitter R package by Jeff Gentry is a great way to get started in Text Analytics. This tutorial is about how to get setup to pull twitter data into R s...
8 年前
IDV User Experience

That's All - I started blogging at IDV in April of 2007. Over the years it has become a terribly important venue for me, where I've shared surprisingly personal events ...
9 年前
Oscillatory Thoughts

New Voytek Lab paper by Richard Gao! - Voytek Lab Cognitive Science PhD student, Richard Gao, wrote a detailed piece about his new paper, "Interpreting the Electrophysiological Power Spectrum,” ...
9 年前
Stochastic Nonsense

Splitting Audio with ffmpeg - Here’s a quick utility to use a set list and ffmpeg to split single audio files into multiple tracks. It splits audio files via a setlist then sets the s...
9 年前
Jeffrey Horner

This is one of my favorite ggplot2 plots I’ve ever made, but it... - This is one of my favorite ggplot2 plots I’ve ever made, but it makes me sad. Can you deduce what this plot conveys? Explain the sporadically dashed colo...
9 年前
Omnia sunt Communia!

Sistemas Fotovoltaicos en Redes de Distribución - Hace un par de meses conseguí una plaza de Profesor Contratado Doctor en la Escuela Técnica Superior de Ingeniería y Diseño … Sigue leyendo →
9 年前
We think therefore we R

The curious case of ARIMA modelling using R - I recently made an interesting observation that I thought is worth sharing. During a data expedition process while trying to fit an ARIMA (auto-regressi...
9 年前
Biochemistry, Molecular, Cellular & Developmental Biology

Night Vision Without the Goggles - The human eye consists of focusing elements and photoreceptors. Images are formed when light is projected onto the retina, which houses photoreceptors call...
9 年前
Systematic Investor

New Home of Systematic Investor Blog - Please visit the New Home of Systematic Investor Blog at SystematicInvestor.GitHub.io
9 年前
Left Censored

R and MPI on Ohio Supercomputer Center’s Oakley cluster - A few years ago, I wrote a short guide to Using R and snow on the Ohio Supercomputer Center’s Glenn cluster. Several things have changed in the world of R ...
9 年前
Statistic on aiR

Adjustment for Multiple Comparison Tests with R: Resources on the web - *1. Bonferroni correction* p.adjust(p, method = "bonferroni") Read: http://en.wikipedia.org/wiki/ *2. Sidak (Dunn-Sidak) correction* Read: http://en.wiki...
9 年前
Carnival of Evolution

Carnival of Evolution #78 - the Short-Arse edition - Finally, the 78rd edition is up. Not too much has happened in the evolution blogosphere to my knowledge, so this edition is really short but good. Like sho...
9 年前
MycorWeb Fungal Genomics

1000 Fungal Genome (1KFG) project: Graduate Student-Postdoc Challenge (2014) - The 1000 Fungal Genome (1KFG) project is a large-scale community sequencing project supported by the Joint Genome Institute (JGI). The goal of 1KFG is to ...
10 年前
Matt's Stats n stuff

Shading between two lines – ggplot - First one to say geom_ribbon loses. I was plotting some data for a colleague, had two lines (repeated experiment) per person (time on the x axis) facetted ...
10 年前
Bioinformatics Tutorials

Comments on “Clinical drug response can be predicted using baseline gene expression levels and in vitro drug sensitivity in cell lines” - I recently co-authored a paper in Genome Biology entitled “Clinical drug response can be predicted using baseline gene expression levels and in vitro drug ...
10 年前
The Ubuntu R Blog

c2d4u and RRutter Ubuntu PPA Updates - On January 27, 2014 Raring Ringtail (13.04) reached end of life. I have been slowly removing the Raring repositories from the RRutter PPA, c2d4u PPA, and...
10 年前
ExploringDataBlog

A question of model uncertainty - It has been several months since my last post on classification tree models, because two things have been consuming all of my spare time. The first is th...
10 年前
PremierSoccerStats

Craig Bellamy – quite dplyr - This weekend brought a couple of firsts in Cardiff’s winner against Norwich After a wretched time at Manchester United, Wilfried Zaha recorded his first Pr...
10 年前
The Atavism

A Very Special edition of Sunday Spinelessness - Wow, it's been a long time since I wrote something here. Let's see if I can remember how this goes: I find a weird-looking bug and take some photos. Then ...
10 年前
anrprogrammer

Database Reflection using dplyr - At work I write a ton of SQL, and I do most of my querying using R. The workflow goes: Create a string with the SQL in R Plug the string into fetchQuery (...
10 年前
Jack Zhu's Bioinfo

userstyles.org - Dictionary.com - permanent IPA pronounciation - Dictionary.com - permanent IPA pronounciation - Themes and Skins for Reference - userstyles.org
11 年前
Sacha Epskamp

A general Shiny app for reading data - A general Shiny app for reading data A general Shiny app for reading data I have been playing around a lot with making web-applications using shiny. What...
11 年前
mintgene

Reconstructing Principal Component Analysis Matrix - Edit: I’ve updated afterPCA function to work with input of any dimensions. Previously it only generated correct output for square matrices. PCA is widely u...
11 年前
Dodecad Ancestry Project

D-statistics on ADMIXTURE components - I have implemented the method of D-statistics as an R function. This will allow you to take your raw genotype data and calculate various D-statistics of th...
11 年前
Simply Statistics

We've Moved! - Simply Statistics has moved to a new platform and so if you’ve been following our blog on Tumblr, you’ll have to update your links/RSS feeds to the new w...
11 年前
genomeboy

Closing time - A note from PLOS Blogs Community Manager Victoria Costello: We’re sad to see Misha Angrist leave our blog roster but we’ve been honored to host the last tw...
12 年前
Quantitative Ecology

Blog Moving - Thanks to everyone who's visited this blog and provided encouragement and suggestions. My blog is moving to http://danieljhocking.wordpress.com/quantitativ...
12 年前
EvolvingSpaces

Sharing Data in Archaeology - ...I know it has been a long time since my last post and many, many things happened. Our CAA session on Uncertainty was great (many thanks to the contribu...
12 年前
Coffee and Econometrics in the Morning

Using apply() to create a unique id - Suppose you have a data set with two identifiers. For example, maybe you're studying the relationships among firms in an industry and you have a way to lin...
12 年前
Talk To Myself

多重PCR引物设计 (2) ——平衡反应体系 - 文 / 屈武斌 (quwubin@gmail.com) 多重PCR的一个关键点在于反应体系的平衡。即使多重PCR体系内每对引物的特异性都很好，在单重PCR测试中扩增效果也非常好，但到了多重体系中却经常出现某些目标产物扩增不出来的现象。原因就在于反应体系的不平衡，这种不平衡导致在前期的几轮反应中某些优势引物...
12 年前
Consistently Infrequent

R: A Quick Scrape of Top Grossing Films from boxofficemojo.com - Introduction I was looking at a list of the top grossing films of all time (available from boxofficemojo.com) and was wondering what kind of graphs I wou...
12 年前
Recology

Recology has moved - Recology has moved to Github, using Jekyll. I just finished moving the Recology blog content, etc. to Github. This move is intended to make it easy to do...
12 年前
Adventures in Statistical Computing

Portfolio Optimization in R, Part 4 Redeux - So where did we mess up? In the calculation of returns for the market cap weighted portfolio and the portfolio optimization portfolio, we simply took the...
12 年前
BMB's commonplace

Google Scholar (still) sucks - (This is a follow-up to my previous post on the topic.) I was encouraged by the appearance of *two* R-based Scholar-scrapers, within a week of each other. ...
13 年前
The Plant Informatics

Rod Page’s VIZBI 2011 annotated links - iPhylo is hands-down my favorite blog, whose author is Rod Page. In the blog post “Some VIZBI 2011 links”, Rod grabbed a list of visualization softwa...
13 年前
dechronization

- Applications for our r-workshop are still being accepted - please apply by June 15! We are pleased to announce an intensive short course on using R to per...
13 年前
joint posterior

compiler and runiregGibbs (bayesm) - So everyone's excited about the new R 2.13 release because of the compiler package. Apparently it is easy to get a 3x speed increase by simply compiling a ...
13 年前
The Prince of Slides

Introduction to The Prince of Slides - In my everlasting search for the answer to every sports (among other topics) question imaginable, I decided to create this blog. While there are a number o...
15 年前
alexfarquhar's posterous

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FinchTalk

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Biology-blog.com: The place for biology

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Data Jujitsu

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Jinlong Zhang's Homepage - Main

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From the bottom of the heap

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Back Side Smack

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猴子的博客

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Carl Boettiger

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Zero Intelligence Agents

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Edwin Chen's Blog

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怡然轩 | Yixuan's Blog

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格物堂

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Sean Davis - Recent Blogging

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All Things Tagxedo

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PolStat Blog

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AnthroGenetics' Blog

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Pathogens: Genes and Genomes

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Programming for Scientists

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Genome Engineering | Site Wide Activity

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NYGC Blog | New York Genome Center

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Tore Opsahl

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O|B|F News

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Hottest Questions - BioStar

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Bio and Geo Informatics

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Suprageography

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Jason Bryer

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