2012年9月28日星期五

after you got a new reference genome - operation you need to do are

Got new genome fasta file?

#1. hg19.fasta.idx
samtools faidx hg19.fasta

#2. hg19.dict
java -Xmx2g -jar ~/tool/picard/CreateSequenceDictionary.jar R=hg19.fasta O=hg19.dict

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