  | split_fasta.pl | will split a multiple fasta file into several files, each containing one sequence, in fasta format. | Feb 2012 | Feb 2012 | 5.0 KB | 60 | |
| | subset_fasta.pl | Takes a multiple fasta file and removes a set of sequences to makes a second fasta file. Useful for pulling subsets of sequences from entire genomes. | Feb 2012 | Feb 2012 | 5.5 KB | 29 | |
| | restrict.pl | a really fast restriction mapper | Feb 2012 | Feb 2012 | 28.4 KB | 25 | |
| | search.pl | This program searches nucleotide or protein sequences for a pattern or motif and tells you whether it is there or not. It can also provide the co-ordinates of each hit. It has a very powerful regular-expression based query capacity. | Feb 2012 | Feb 2012 | 22.2 KB | 26 | |
| | seqstats.pl | Displays "Name", "number of nucleotides" and "%G+C content" for each entry in a multiple fasta file | Feb 2012 | Feb 2012 | 2.3 KB | 20 | |
| | revcom.pl | Reverse-complements DNA sequences in fasta format. | Feb 2012 | Feb 2012 | 4.1 KB | 20 | |
| | translate.pl | Translates fasta files of nucleotide sequence to peptide sequences. The fasta file can be a multiple fasta file. The reading frame is specified on the command line. If the frame "-f" parameter is omitted, translate defaults to reading frame "+1". | Feb 2012 | Feb 2012 | 8.0 KB | 29 | |
| | cutseq_fasta.pl | Takes a large fasta file and cuts a subset of sequences to make a second fasta file. | Feb 2012 | Feb 2012 | 9.4 KB | 42 | |
| | search.php | a Web-interface for 'search' | Nov 2011 | Nov 2011 | 10.8 KB | 24 | |
| | Tk_search.pl | GUI-based sequence (protein or DNA) searcher | Nov 2011 | Nov 2011 | 46.6 KB | 16 | |
| | yarp.pl | yarp.pl - a Web-based version of 'restrict' written in Perl | Nov 2011 | Nov 2011 | 33.1 KB | 28 | |
| | restrict.php | restrict.php - a PHP wrapper for 'restrict' so that it can be served on the web | Nov 2011 | Nov 2011 | 9.8 KB | 9 | |
| | pileup2fasta.pl | Samtools pileup to multiple fasta | Jun 2011 | Jun 2011 | 8.1 KB | 56 | |
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